Special

FBgn0004657 @ dm6

Biotype
protein_coding
Gene Symbol
mys
Description
The gene myospheroid is referred to in FlyBase by the symbol Dmelmys (CG1560, FBgn0004657). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (2 unique). Gene sequence location is X:8061645..8070237. Its molecular function is described by: protein heterodimerization activity; protein binding; extracellular matrix protein binding; integrin binding. It is involved in the biological process described with 36 unique terms, many of which group under: cell adhesion; biological adhesion; supramolecular fiber organization; actin cytoskeleton organization; embryo development. 161 alleles are reported. The phenotypes of these alleles manifest in: pigment cell; extracellular matrix; somatic mesoderm derivative; visceral muscle; cell-substrate junction. The phenotypic classes of alleles include: immune response defective; phenotype; cell shape defective; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period.
Coordinates
chrX:8061645-8070237:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
72.73
84.31
0
Alternative 5'ss
145
chrX:8061726-8061870
+
13.32
58.97
0
Exon Skipping
85
chrX:8065448-8065532
+
93.02
52.21
0
Exon Skipping
85
chrX:8066098-8066182
+
6.16
49.04
0
Intron Retention
73
chrX:8064460-8064532
+
3.72
61.82
0
Intron Retention
686
chrX:8064762-8065447
+
13.99
86.76
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000139626 ITGB7 2-to-3
Human hg38 ENSG00000150093 ITGB1 2-to-3
Human hg38 ENSG00000160255 ITGB2 2-to-3
Human hg19 ENSG00000139626 ITGB7 2-to-3
Human hg19 ENSG00000150093 ITGB1 2-to-3
Human hg19 ENSG00000160255 ITGB2 2-to-3
Mouse mm10 ENSMUSG00000000157 Itgb2l 2-to-4
Mouse mm10 ENSMUSG00000000290 Itgb2 2-to-4
Mouse mm10 ENSMUSG00000001281 Itgb7 2-to-4
Mouse mm10 ENSMUSG00000025809 Itgb1 2-to-4
Mouse mm9 ENSMUSG00000000157 Itgb2l 2-to-4
Mouse mm9 ENSMUSG00000000290 Itgb2 2-to-4
Mouse mm9 ENSMUSG00000001281 Itgb7 2-to-4
Mouse mm9 ENSMUSG00000025809 Itgb1 2-to-4
Rat rn6 ENSRNOG00000001224 Itgb2 1-to-7
Rat rn6 ENSRNOG00000004516 Itgbl1 1-to-7
Rat rn6 ENSRNOG00000006569 Itgb8 1-to-7
Rat rn6 ENSRNOG00000010966 Itgb1 1-to-7
Rat rn6 ENSRNOG00000048449 Itgb3 1-to-7
Cow bosTau6 ENSBTAG00000015910 ITGB1 2-to-3
Cow bosTau6 ENSBTAG00000017060 ITGB2 2-to-3
Cow bosTau6 ENSBTAG00000018993 ITGB7 2-to-3
Chicken galGal4 ENSGALG00000007145 ITGB1 2-to-2
Chicken galGal4 ENSGALG00000007511 ITGB2 2-to-2
Chicken galGal3 ENSGALG00000007145 F1N8N7_CHICK 2-to-2
Chicken galGal3 ENSGALG00000007511 F1NM67_CHICK 2-to-2
Zebrafish danRer10 ENSDARG00000016939 itgb2 2-to-6
Zebrafish danRer10 ENSDARG00000022689 itgb1b.2 2-to-6
Zebrafish danRer10 ENSDARG00000053232 itgb1b.1 2-to-6
Zebrafish danRer10 ENSDARG00000071863 itgb1a 2-to-6
Zebrafish danRer10 ENSDARG00000104484 itgb1b 2-to-6