FBgn0020620 @ dm6
Biotype
protein_coding
Gene Symbol
RN-tre
Description
The gene Related to the N terminus of tre oncogene is referred to in FlyBase by the symbol DmelRN-tre (CG8085, FBgn0020620). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (5 unique). Gene sequence location is 2R:13984815..13990707. Its molecular function is described by: Rab GTPase binding; GTPase activator activity. It is involved in the biological process described with: activation of GTPase activity; intracellular protein transport; regulation of GTPase activity. 11 alleles are reported. The phenotypes of these alleles manifest in: organism; multi-tissue structure; head segment; circulatory system; female germline cyst. The phenotypic classes of alleles include: melanotic mass phenotype; planar polarity defective; cell migration defective; neuroanatomy defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages.
Coordinates
chr2R:13984815-13990707:-
Assembly
GENOMIC BROWSER[edit]
EXPRESSION VALUES[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)
EVENTS AND AS PROFILES[edit]
Associated events[edit]
Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Orthologous genes[edit]
| Organism | Assembly | Gene ID | Gene Name | Orthology Type
|
|---|---|---|---|---|
| Human | hg38 | ENSG00000148429 | USP6NL | 1-to-15 |
| Human | hg38 | ENSG00000189375 | TBC1D28 | 1-to-15 |
| Human | hg38 | ENSG00000260287 | TBC1D3G | 1-to-15 |
| Human | hg38 | ENSG00000274512 | TBC1D3L | 1-to-15 |
| Human | hg38 | ENSG00000274808 | TBC1D3B | 1-to-15 |
| Human | hg19 | ENSG00000148429 | USP6NL | 1-to-15 |
| Human | hg19 | ENSG00000189375 | TBC1D28 | 1-to-15 |
| Mouse | mm10 | ENSMUSG00000039046 | Usp6nl | 1-to-1 |
| Mouse | mm9 | ENSMUSG00000039046 | Usp6nl | 1-to-1 |
| Rat | rn6 | ENSRNOG00000017644 | Usp6nl | 1-to-1 |
| Cow | bosTau6 | ENSBTAG00000019488 | USP6NL | 1-to-2 |
| Cow | bosTau6 | ENSBTAG00000032364 | 1-to-2 | |
| Zebrafish | danRer10 | ENSDARG00000011088 | si:ch211-288d18.1 | 1-to-3 |
| Zebrafish | danRer10 | ENSDARG00000022187 | usp6nl | 1-to-3 |
| Zebrafish | danRer10 | ENSDARG00000051836 | im:6904482 | 1-to-3 |