FBgn0026403 @ dm6

Biotype

protein_coding

Gene Symbol

Ndg

Description

The gene Nidogen is referred to in FlyBase by the symbol DmelNdg (CG12908, FBgn0026403). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 2R:10313891..10322104. Its molecular function is described by: calcium ion binding; extracellular matrix structural constituent. It is involved in the biological process described with: cell-matrix adhesion; basement membrane organization; regulation of basement membrane organization; basement membrane assembly involved in embryonic body morphogenesis. 31 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; mechanosensory system; basement membrane; peripheral nervous system; larval thorax. The phenotypic classes of alleles include: fertile; semi-fertile; phenotype; locomotor behavior defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages.

Coordinates

chr2R:10313891-10322104:+

Assembly

dm6

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

Neural diversity
Neurogenesis
Neuronal activity
Splicing factor regulation (brain)
Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event

Type

Length

Coordinates

Strand

PSI Average

PSI Range

Annotated Functions

DmeINT0023482

Intron Retention

63

chr2R:10318999-10319061

+

2.74

93.94

0

DmeINT0023483

Intron Retention

60

chr2R:10319208-10319267

+

2.37

100

0

Orthologous genes[edit]

Organism	Assembly	Gene ID	Gene Name	Orthology Type
Human	hg38	ENSG00000010327	STAB1	1-to-5
Human	hg38	ENSG00000087303	NID2	1-to-5
Human	hg38	ENSG00000100068	LRP5L	1-to-5
Human	hg38	ENSG00000116962	NID1	1-to-5
Human	hg38	ENSG00000136011	STAB2	1-to-5
Human	hg19	ENSG00000010327	STAB1	1-to-5
Human	hg19	ENSG00000087303	NID2	1-to-5
Human	hg19	ENSG00000100068	LRP5L	1-to-5
Human	hg19	ENSG00000116962	NID1	1-to-5
Human	hg19	ENSG00000136011	STAB2	1-to-5
Mouse	mm10	ENSMUSG00000005397	Nid1	1-to-4
Mouse	mm10	ENSMUSG00000021806	Nid2	1-to-4
Mouse	mm10	ENSMUSG00000035459	Stab2	1-to-4
Mouse	mm10	ENSMUSG00000042286	Stab1	1-to-4
Mouse	mm9	ENSMUSG00000005397	Nid1	1-to-4
Mouse	mm9	ENSMUSG00000021806	Nid2	1-to-4
Mouse	mm9	ENSMUSG00000035459	Stab2	1-to-4
Mouse	mm9	ENSMUSG00000042286	Stab1	1-to-4
Rat	rn6	ENSRNOG00000000341	Nid2	1-to-2
Rat	rn6	ENSRNOG00000002461	Nid1	1-to-2
Cow	bosTau6	ENSBTAG00000006010	STAB2	1-to-4
Cow	bosTau6	ENSBTAG00000007244	NID1	1-to-4
Cow	bosTau6	ENSBTAG00000014782	STAB1	1-to-4
Cow	bosTau6	ENSBTAG00000021945	NID2	1-to-4
Chicken	galGal4	ENSGALG00000012394	NID2	1-to-7
Chicken	galGal3	ENSGALG00000012394	NID2	1-to-7
Zebrafish	danRer10	ENSDARG00000009471	nid2b	1-to-6
Zebrafish	danRer10	ENSDARG00000045748	stab2	1-to-6
Zebrafish	danRer10	ENSDARG00000068710	nid1a	1-to-6
Zebrafish	danRer10	ENSDARG00000075707	nid2a	1-to-6
Zebrafish	danRer10	ENSDARG00000103129	CU207219.1	1-to-6