Special

FBgn0030556 @ dm6

Biotype
protein_coding
Gene Symbol
mRNA-cap
Description
The gene mRNA-capping-enzyme is referred to in FlyBase by the symbol DmelmRNA-cap (CG1810, FBgn0030556). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is X:14240266..14242822. Its molecular function is described by: polynucleotide 5'-phosphatase activity; protein tyrosine phosphatase activity; protein tyrosine/serine/threonine phosphatase activity; mRNA guanylyltransferase activity. It is involved in the biological process described with: positive regulation of smoothened signaling pathway; 7-methylguanosine mRNA capping; dephosphorylation. 17 alleles are reported. The phenotypes of these alleles manifest in: wing; embryo. The phenotypic classes of alleles include: visible; female semi-sterile. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed within 00-18 hour embryonic stages. CAVEAT: These RNA-Seq temporal profiles depend upon RNA-Seq reads that are uniquely placed in the genome. For this reason, genes such as histones, Stellates and many classes of RNA genes that are present in multiple exact or near exact copies in the genome, expression levels may be reported as much lower than their true values.
Coordinates
chrX:14240266-14242822:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Intron Retention
67
chrX:14240785-14240851
-
3.21
50.54
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000111880 RNGTT 1-to-1
Human hg19 ENSG00000111880 RNGTT 1-to-1
Mouse mm10 ENSMUSG00000028274 Rngtt 1-to-1
Mouse mm9 ENSMUSG00000028274 Rngtt 1-to-1
Rat rn6 ENSRNOG00000007867 Rngtt 1-to-1
Cow bosTau6 ENSBTAG00000002725 RNGTT 1-to-1
Chicken galGal4 ENSGALG00000015787 RNGTT 1-to-1
Chicken galGal3 ENSGALG00000015787 RNGTT 1-to-1
Zebrafish danRer10 ENSDARG00000032261 rngtt 1-to-1