FBgn0035916 @ dm6
Biotype
protein_coding
Gene Symbol
GAPsec
Description
The gene GTPase activating protein, SECIS-dependent read-through is referred to in FlyBase by the symbol DmelGAPsec (CG5978, FBgn0035916). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3L:8622039..8623901. Its molecular function is described by: GTPase activator activity; translation elongation factor binding; Rab GTPase binding; GTPase binding. It is involved in the biological process described with: activation of GTPase activity; regulation of GTPase activity; intracellular protein transport; translational readthrough. 6 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; fertile. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, during late larval stages, at stages throughout the pupal period.
Coordinates
chr3L:8622039-8623901:-
Assembly
GENOMIC BROWSER[edit]
EXPRESSION VALUES[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)
EVENTS AND AS PROFILES[edit]
Associated events[edit]
Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Orthologous genes[edit]
| Organism | Assembly | Gene ID | Gene Name | Orthology Type
|
|---|---|---|---|---|
| Human | hg38 | ENSG00000107021 | TBC1D13 | 1-to-1 |
| Human | hg19 | ENSG00000107021 | TBC1D13 | 1-to-1 |
| Mouse | mm10 | ENSMUSG00000039678 | Tbc1d13 | 1-to-1 |
| Mouse | mm9 | ENSMUSG00000039678 | Tbc1d13 | 1-to-1 |
| Rat | rn6 | ENSRNOG00000015970 | Tbc1d13 | 1-to-1 |
| Cow | bosTau6 | ENSBTAG00000012480 | TBC1D13 | 1-to-1 |
| Chicken | galGal4 | ENSGALG00000004645 | 1-to-1 | |
| Chicken | galGal3 | ENSGALG00000004645 | TBC1D13 | 1-to-1 |
| Zebrafish | danRer10 | ENSDARG00000102404 | TBC1D13 | 1-to-1 |