Downloads

From this page you can download tables with the information in VastDB. Tables are split by species, and tables with different features of the database can be downloaded separately:

General files

• EVENT CONSERVATION table - Information about the evolutionary conservation for all AS events for all pairwise species comparisons.
• GENE ORTHOLOGY table - Information about the orthology relationshipts for all pairwise species comparisons.

Homo sapiens (hg38)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.

Homo sapiens (hg19)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.

Mus musculus (mm10)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.

Mus musculus (mm9)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.

Bos taurus (bosTau6)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.

Gallus gallus (galGal4)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.

Gallus gallus (galGal3)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.

Danio rerio (danRer10)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.

Drosophila melanogaster (dm6)

AS events

• EVENT INFORMATION - Information about AS event coordinates and sequences.
• EVENT METRICS - Summary statistics for the usage of each AS event.
• MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).

Event features

• SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
• PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

Protein impact

• PROTEIN IMPACT - Predicted effect of the AS event on the open reading frame of the transcript. Version v3.
• PROTEIN ISOFORMS - Mappings of events to Protein IDs.
• DOMAIN OVERLAP (PFAM) - Overlap of AS events with Pfam domains.
• DOMAIN OVERLAP (PROSITE) - Overlap of AS events with PROSITE domains.
• PROTEIN DISORDERED REGIONS - Intrinsic disorder rates for A, C1 and C2 exons, using disopred.

Genes

• GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
• MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
• EVENT_ID to GENE_ID - Table relating genes to AS events.

Samples

• SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
• SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.