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vast-tools v2.1.2 released

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Published on 07 September 2018, 12:00 by Webadmin
A new version of vast-tools has been released. You can find it in our GitHub repository.


Here is a changelog for the 2.1.2 version:

New features

  • A new variable (`--use_all_excl_eej`) in `combine` allows users to choose an alternative way of quantifying exclusion reads in the splice-site-based module. Together with `--extra_eej` may increase sensitivity, but also false positives.
  • A new variable (`--extra_eej`) allows defining the number of additional further upstream (for the C1 exons) and further downstream (for the C2 exons) junctions that are considered to quantify exclusion in the annotation-based module as well as in the splice-site-based module if `--use_all_excl_eej` is active. Default is 5.
  • NOTE: running `combine` v2.1.2 with default options should provide identical results to v2.1.1.


Updates and fixes

  • Updates in verbose text messages.


Post Approvaltrue +
Post AuthorWebadmin +
Post Publication date12:00:00, 7 September 2018 +
Post Tagvast-tools +
Post Titlevast-tools v2.1.2 released +