Published on 07 September 2018, 12:00 by Webadmin —
A new version of vast-tools has been released. You can find it in our GitHub repository.
Here is a changelog for the 2.1.2 version:
New features
- A new variable (`--use_all_excl_eej`) in `combine` allows users to choose an alternative way of quantifying exclusion reads in the splice-site-based module. Together with `--extra_eej` may increase sensitivity, but also false positives.
- A new variable (`--extra_eej`) allows defining the number of additional further upstream (for the C1 exons) and further downstream (for the C2 exons) junctions that are considered to quantify exclusion in the annotation-based module as well as in the splice-site-based module if `--use_all_excl_eej` is active. Default is 5.
- NOTE: running `combine` v2.1.2 with default options should provide identical results to v2.1.1.
Updates and fixes
- Updates in verbose text messages.