BtaALTA0000197-2/3 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E583]
Coordinates
chr7:45528695-45529249:-
Coord C1 exon
chr7:45529178-45529249
Coord A exon
chr7:45528796-45528830
Coord C2 exon
chr7:45528695-45528795
Length
35 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
CAGCATGGTCCCACCCACAGTGT
3' ss Score
5.43
Exon sequences
Seq C1 exon
AGCCCTGTCCACCCTGCCCTGACACCCGCGGTCGTGCCCACCGGTTACTCCACTATTGCGGCAGTGACTTCG
Seq A exon
TGTTCCGGGCCCGTGTGCTGGGCCGCGTCCGCCAG
Seq C2 exon
GCTCAGGAGACTCGCTATGAGGTGCATGTGCAGCTCATCTACAAGAATCGCTCTCCACTTCGGGCCCTGGAGTACGTGTGGGCGCCAAGCCGCTGCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006662-1-3,1-2,1-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.7=32.0)
A:
NA
C2:
PF0175916=NTR=PD(91.3=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACCGGTTACTCCACTAT
R:
GTACTCCAGGGCCCGAAGT
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development