GgaALTA0009201-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3129012-3129283:-
Coord C1 exon
chr28:3129212-3129283
Coord A exon
NA
Coord C2 exon
chr28:3129012-3129112
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
ACCCCACTCCCACCCTGCAGTGT
3' ss Score
8.24
Exon sequences
Seq C1 exon
GGCGATGCGGGCGGTGCCACCCACCCAAGGGGCGCTCTCAGCGCATCCGGCACTTCTGCCAGAGTGACTTCG
Seq A exon
NA
Seq C2 exon
TGTTCCGAGCACGGATCCTGGCGCGGCGCTCGGTGGGGCAGGAGATGCGCTACGAGGTGCAGGTGGTGACACCGTACCGGCACCGCTTCCCCATGGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298-16-16,16-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.7=32.0)
A:
NA
C2:
PF0175916=NTR=PD(91.3=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCATCCGGCACTTC
R:
TCACCACCTGCACCTCGTAG
Band lengths:
103-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]