GgaALTD0007150-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3128805-3129283:-
Coord C1 exon
chr28:3129212-3129283
Coord A exon
chr28:3129202-3129211
Coord C2 exon
chr28:3128805-3129112
Length
10 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
ACCCCACTCCCACCCTGCAGTGT
3' ss Score
8.24
Exon sequences
Seq C1 exon
GGCGATGCGGGCGGTGCCACCCACCCAAGGGGCGCTCTCAGCGCATCCGGCACTTCTGCCAGAGTGACTTCG
Seq A exon
GTGAGCAGCG
Seq C2 exon
TGTTCCGAGCACGGATCCTGGCGCGGCGCTCGGTGGGGCAGGAGATGCGCTACGAGGTGCAGGTGGTGACACCGTACCGGCACCGCTTCCCCATGGTACCACGGGAGTACGTCTGGGTGCCCGACACGTGCGGCTGCCCCACGCTGCTGGGGGGCCACGACTACGTGCTGATGGCACGGCGCCACGTCAACTACGAGCACACGCTGAACCGCATCCTGCTGCAACGAGACGGCTACGCACGGCCCTGGTCACCCCGCGAGGAGCGCGCGGTGCGGGACGCGGGACGGCACTGTGCCCACCTGCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298-16-16,17-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.7=32.0)
A:
NA
C2:
PF0175916=NTR=PD(91.3=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCTGCCAGAGTGACTT
R:
TCACCACCTGCACCTCGTAG
Band lengths:
92-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]