BtaALTA0000712-2/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6K9]
Coordinates
chr22:92868-97554:-
Coord C1 exon
chr22:97400-97554
Coord A exon
chr22:95253-95255
Coord C2 exon
chr22:92868-95252
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGATAAGC
5' ss Score
0.71
3' ss Seq
TTTTGTGGATTTTTTTAAAGTAG
3' ss Score
3.17
Exon sequences
Seq C1 exon
AAAAAAAAAAAGAAGAAGAAGCACAAAAGTATTGAAGTGGAAGTATCAGACAATGTATGTGATACTGTTGATGAGAGTGGATTGATTCAGCAGATAAAGAGTGGAGGAAACAGCAATCAGGAGTTTGTTGCTATGGAGGATGAAGGTTCTGATAG
Seq A exon
TAG
Seq C2 exon
TGATCCTGGCGTGCATAGAAAGGAAATAAAGAAAAAGGACAATAGCAAATGGACACCAGAAGAATGTGTAATTGCACCAATATTTGAAAAGACCGATTCACTGACTGGTGGTCTGCTGCATGTTAATGATGACAGCATTTTAAGTGAAGTGGATCAGGATGATGACAGGTAATATCTACAAATTTTTTATTTCTAGAGGAAGAAATAAGCACTGGATACTTCTGGAAATGGAGCAGCATAATATAGTGTACAGGCCAAGACAAGAGATTCCTCAACTATAGTGGAAAACACTGCTGAAAGATTAAAGTGAGGACCAGTGCCTTTGGCCAGAAATCATTTCAGTAAATAGTCTCCTTGAAAGCTGGACTGTAGTGAATACATGTAAACAGCCCTGTATGGAATATTTGCTGGGACAGGCAATAGAGAACTAGATGGTAACTGAAGAGGAATGTGGAGTTCAAAGGAGTTTCTTGTTTTATGTTAAGATGGGAGCTTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023954-21-19,21-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGTGGATTGATTCAGCAGA
R:
TCCTTTCTATGCACGCCAGGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development