HsaALTA0000461-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27335282-27337908:-
Coord C1 exon
chr10:27337730-27337908
Coord A exon
chr10:27335450-27335452
Coord C2 exon
chr10:27335282-27335449
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TTCCCATGGATTTTTTAAAGTAG
3' ss Score
2.51
Exon sequences
Seq C1 exon
GTTGAAGAAGAAAGGAAAAAACACAGAAATAATGAAATGGAAGTATCAGCAAACATACATGATGGTGCTACTGATGATGCTGAAGATGATGATGATGATGATGGATTAATTCAAAAAAGAAAGAGTGGAGAAACTGATCATCAGCAATTTCCCAGGAAGGAAAATAAAGAGTATGCTAG
Seq A exon
TAG
Seq C2 exon
TGGTCCTGCCTTGCAAATGAAGGAAGTAAAGAGCACTGAAAAAGAAAAACGGACCTCGAAAGAATCTGTGAATTCACCAGTGTTTGGGAAGGCCAGTTTACTAACTGGTGGCCTGCTACAAGTGGATGATGACAGCAGTTTAAGTGAAATAGATGAGGATGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-25-26,25-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.844
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAATTTCCCAGGAAGGA
R:
ACAGATTCTTTCGAGGTCCGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)