BtaALTA0002755-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17935341-17937561:-
Coord C1 exon
chr13:17937407-17937561
Coord A exon
chr13:17935509-17935511
Coord C2 exon
chr13:17935341-17935508
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TTTTGTGGATTTTTTTAAAGTAG
3' ss Score
3.17
Exon sequences
Seq C1 exon
GTTGAAGAAGAAAAGAAGAAGCATAAAAGTAGTGAAGTGGAAATATCAGACAATGTATGTGATACTGCTGATGAGAGTGGATTGATTCAGCAGAGAAAGAGTGGAGGAAACAGCAGTCAGGAGTTTGCTGCTATGGAGAATGAAGGTTCTGATAG
Seq A exon
TAG
Seq C2 exon
CGATCCTGACGTGCATAGGAAGGAAGTAAAGAAAAAGGACAATAGCAAATGGACACCAGAAGGATGTGTGACTGCACCCATATTTGAAAAGACCGATTCACTGACTGGTGGTCTGCTGCATGTTAATGATGACAGCATTTTAAGTGAAGTGGATCAGGATGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-19-20,19-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCAGGAGTTTGCTGCTA
R:
TCCTTCTGGTGTCCATTTGCT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development