BtaALTA0000805-1/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B977]
Coordinates
chr5:100185438-100188787:-
Coord C1 exon
chr5:100188642-100188787
Coord A exon
NA
Coord C2 exon
chr5:100185438-100185520
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AGCATTTCTTCTCCTTAAAGTCT
3' ss Score
5.08
Exon sequences
Seq C1 exon
CTCAGTGTCATTCTTGTCCAGAGAATTGGGTTTGGTTCAGATGCAGCTGTTACTACTTTTCCAAGGGAATGTTAACTTGGATAGAGAGTCAAAGTGCCTGCTCATCTCTAAATTCCAGTCTCATCAAGATAAACAAGGAGGAGATG
Seq A exon
NA
Seq C2 exon
TCTTTCTTTTGGATTGGAGTCTACTATAATGAAACTGGCAGGCACTGGCTGTGGGAAAATGATTCACTTCTGCCTTATGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030426-4-9,4-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=FE(33.8=100),PF148621=Defensin_big=PD(48.7=75.5)
A:
NA
C2:
PF0005916=Lectin_C=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTCAAAGTGCCTGCTCA
R:
CCAGTGCCTGCCAGTTTCATT
Band lengths:
111-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development