BtaINT0006096 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B977]
Coordinates
chr5:100185438-100188787:-
Coord C1 exon
chr5:100188642-100188787
Coord A exon
chr5:100185539-100188641
Coord C2 exon
chr5:100185438-100185538
Length
3103 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATGTATTTGTTTATCACTAGCAT
3' ss Score
5.92
Exon sequences
Seq C1 exon
CTCAGTGTCATTCTTGTCCAGAGAATTGGGTTTGGTTCAGATGCAGCTGTTACTACTTTTCCAAGGGAATGTTAACTTGGATAGAGAGTCAAAGTGCCTGCTCATCTCTAAATTCCAGTCTCATCAAGATAAACAAGGAGGAGATG
Seq A exon
GTAAGTTGTGAAACAGAGCATCATAATGGTATCTGAAATATGTGAAGTCGATTGAGTGGATTAAGCTGAGAATTATTTGCACTTACCTGACCTCAGCACTAGACAAATGGCTGAAGGGTATGACTAGTTTATCTTTTGTTTACATTTTCATATGCAAAATGTGCCACTGGACCAGGCTCTTATGTAAAGGGGAGAGATGTTTTGAAATAATAAGTAGAAAGACCTTCATGTACAGACAGATACTGTTAGAATCGCCTTACACAAGGCACCTAGAATAGTCAAACTCAGAGTCAGAAAGTACATTGGTAGATGCTAGCGGCAGGGGAGTACATTGCGGGGGAGGGGTGAAGGGGAGTTATTGTGTAGTGGGGACAGAGTTTTGGTTTCAGTTCAGTTCAGTCGCTCAGTCTTGTCTGACTCTTTGCAACCCCATGAATTGCAGCATGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTTAAACTCACATCCATCGAGCTGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTATTTTCCAAAGAGTCAACTCTTCGCATGAGGTGGCCAAAGTATCAGACTTTCAGCTTTAGCATCATTCCTTCCAAAGAACACCCAGGACTGATTTCCTTTAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTTAAGAGTCTTCTCCAACACCACAGTTCTAAAGCATCAATTCTCTGGCGCTCAGCCTTCTTCACAGTCCAGCTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACAGACCTTTGTTGGCAAAGTAATGACTCTGATTTTGAATATGCTGTCTAGGTTAGTCATAACTTTCCTTCCAAAGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCTCCCAAAATAAAGTCTGACACTGTTTCCACTATTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCATTCTCCTCCTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAAAGTGGTGTCATTTGCGTATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGTGTTTCTCATGATGTACTCTGCATATATGTTAAATAATCAGGGTGACAATATACATCCTTGACGTACTCCTTTCCCTATTTGGACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCCATACAGGTTTCTCTAGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGGCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCGGATGTTGGCAATATGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAACTTGAACATCTGGAAGTTCACAGTTCATGTATTGCTGAAGCCTGGCTCGGAGAATTTTGAGCATTACTTTACTAGCTTGTGAGATGAGTGCAATTGTGTGGTAATTTGAGCATTCTTTGTCATTGCCTTTCTTTGGGATTGGAATGAAAACCGAACTTTTCCAGTCCTGTGGCCACTGAAGAGTTTTCCAAATTTGCTGGCATATCGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTCGTAGTGATGCTTTCTAAGGCCCACTTAACTTCACATTCCAGCGTGTCTGGCTCTAGGTGAGTGTTCACACCATCGTGATTATCTGGGTCATGAAGCTCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAATATCTTGTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCGAGCCTATCTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTTTGTTTTCCTGTATTTCTTTGTATTGATTGCTTTGGTTTAGGAAGGTGCAAAACTCTGGAGACAGATGAAGGTTGAGAGTTTCATAACAATGTGAATGTACTTAGTGCCATCATTAACTGTACAGTTAAATATAGTTCAAATCATATATTTTATGTTATGTGAACATGTTAATCGCTCAGTTGTGTCTGACTCTTTGTGACTCCATGGACTGTAACCCACCAGGCTTCTCTGTCCATGGGATTCTCTAGGCAAGAATACTGGAGGGGGTTGCCATGCCCTTCTCCAGGGGAGCTTCCTAGCCCAGGTGAATTCTACCCCCTCAAAAAAAGACATTTAGAAAATATGCATGTTGAATGAATTTTGAAGGAGACAGTTATTACAAGAACTATCCCAATCAGAGGAAAAAGAACCTGGTATATAGCCCAACAACCAGATAGTATAGCCTTTGTGGCCCGAAAGTTAATGGCAATGTGTGAGCAGTGCCTCACAATCTAGAACAGGATGCAAGGAGATGGAGGAGCTTTCCCTCACTCTGCCAATGGACATCAGCATCGGGTTAAAGCATCCACTGTAAGAATTCTTCTGATAGAGGATGTTTTCTCCATTCTGCACCTGAAGAGACAGGAGTTGGACATTGGGGGTAAAATTAATCTTCAAGACATCTATAAAGGTCTTGCTTATAGACCTTGCTGCCATTCCTTTAAAAACCTTACTCCCTTATTCACCAAACCCACACTATCTTTTTACTCATATTTATTTATTTTCCATGTCTCCCATAAGAACTGGGAATTTTGTTTTGTTTCTTGCTGTATCATTAGCTAAATCTCAAAATGATTTTGGAATATAGCATATGATAATGAGTTTGTGGACAGGATGAATTGAATAAAGATAAACACGGTGTTGAATTTTTTAAAGAGGACTCTCATGCAGTTGATGAAAAGATAATAACGAGAACTTTGTATTTGCATGTATTTGTTTATCACTAG
Seq C2 exon
CATTTCTTCTCCTTAAAGTCTTTCTTTTGGATTGGAGTCTACTATAATGAAACTGGCAGGCACTGGCTGTGGGAAAATGATTCACTTCTGCCTTATGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030426:ENSBTAT00000042959:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=FE(33.8=100),PF148621=Defensin_big=PD(48.7=75.5)
A:
NA
C2:
PF0005916=Lectin_C=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]