RnoINT0080283 @ rn6
Intron Retention
Gene
ENSRNOG00000058714 | Klre1
Description
killer cell lectin-like receptor, family E, member 1 [Source:RGD Symbol;Acc:727903]
Coordinates
chr4:163352778-163353933:+
Coord C1 exon
chr4:163352778-163352923
Coord A exon
chr4:163352924-163353832
Coord C2 exon
chr4:163353833-163353933
Length
909 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CGTTGTTTTCTCACTTTTAGGAT
3' ss Score
13.13
Exon sequences
Seq C1 exon
GACTCCATCATCCCTGCCCAGAGAACTGGGTTTGGTTCAGGTGCAGCTGTTACTACTTCTCCAAGGAAAAGCTAGTTTGGAGAGAGAGTCAGCGTGCCTGCTTGTCCTTCAATTCTAGTCTCATAAGGATGAACAAAGAGGAGATG
Seq A exon
GTAAGTTCTGCAACTTGAGTCACAAGGCGTGAGATCCCTGTAGAGATAAAATAGTTTAAATAGAATGCCACCTACACTAGTTTAAAATTAGCACTAGATTCATTGTTGAAGGACAAAGCTGCTTTATCTTTTGTGGCACTCTTCATGTCAAGTAGATCTATGTATTATGTGAAAAACATAGGAATAGTGAAATTATTGAGAACCCAAGGATAGAGGATCACAAGTTCAAGACCTGCCTAGGCTACAGAGAGAGTTGAAGGCAAGTCTGGGCAACTTTAAAAAGCCTCTCTTAAAAAATGATGAATACAGCTCAGTGATAAAACATTTGACAAACATGTAGGGCCAGAAGTTCAGTCCTTAGTACCACCAATAAATAATAAATATATAAATTCATAAACATGTGTAAGGAATTCAGAAAGAAACACTTGTTCTCAGTAACAGATTAGCCAGAGAGAAAAGAAAAATAAAACAAGACAAAACAGCTCTGCATAGCCCAACATGATCTAGAAGACCAAATGACAGTGGCAGAGAATTTTTTTCTAACTCCAGCCATGATGTGAGAATAAAGTTAAAGTGTCTACAGTGTGCTTCCCCAATACAGAGCCTCTTTATTAGATGCTTCAAGGTACCACTGTGAAGTGAGTCAAGTGTAAAAACTAAACCTCACTCTTGTCTCAAACTCAACACTATCCTTTTGCTCACTTTGCTTATTTTCCAAATCCCCCACGAGAACAGAAAATTTACACTTTTCCTAGCTTGGGTATGTCTTCTAGTATAGCATCAGGTGTGTGAGGCTGCAGACTTCAGAATCAACATATATAGACGGACTCGACATTTTCAAAGTCACCTCCATAGAACTGATGACGAGAAGGATGCGACCCATAAATATCGTTGTTTTCTCACTTTTAG
Seq C2 exon
GATTTCTTCTCTTTGAAGTCTTTCTTTTGGGTTGGAGTTTACTACGATGAAACCAGCAAACAGTGGCTGTGGGACGACCATTCAGTTCTACCCAGTGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058714:ENSRNOT00000084823:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(26.8=53.1)
A:
NA
C2:
PF0005916=Lectin_C=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCATCATCCCTGCCCAG
R:
TCCCACTGGGTAGAACTGAATG
Band lengths:
246-1155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]