RnoEX0047530 @ rn6
Exon Skipping
Gene
ENSRNOG00000058714 | Klre1
Description
killer cell lectin-like receptor, family E, member 1 [Source:RGD Symbol;Acc:727903]
Coordinates
chr4:163351722-163353933:+
Coord C1 exon
chr4:163351722-163351823
Coord A exon
chr4:163352094-163352132
Coord C2 exon
chr4:163353833-163353933
Length
39 bp
Sequences
Splice sites
3' ss Seq
GATCTTGACTATTTTTGTAGTAT
3' ss Score
3.07
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGAATTGCTCCCCTCCGTGGAGGCTCATCTCTAGTGTGCTCTTTGTGGTCTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCATTTTCACCACAAGGT
Seq A exon
TATCTTCTGAAAGATCATCTTCTAATATTCATCAGGAAG
Seq C2 exon
GATTTCTTCTCTTTGAAGTCTTTCTTTTGGGTTGGAGTTTACTACGATGAAACCAGCAAACAGTGGCTGTGGGACGACCATTCAGTTCTACCCAGTGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058714_MULTIEX1-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=FE(34.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGTCTGCCTTCTCCTGA
R:
AGCCACTGTTTGCTGGTTTCA
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]