BtaEX0001018 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B977]
Coordinates
chr5:100188642-100189984:-
Coord C1 exon
chr5:100189880-100189984
Coord A exon
chr5:100189608-100189646
Coord C2 exon
chr5:100188642-100188805
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATATTTGACTGTTTTTGCAGCAT
3' ss Score
6.99
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGATGTCTTGCCTCTTCCATGGAGGCTCATTTCTAAAATCCTGGGTGTCTTGTGCCTTCTCCTAATGGCCATGGCCATGGTGGTAGCTGTTGTTACTGCAAACT
Seq A exon
CATCTTCCAAAAAATCACCTCTCAAAATCCAGCAGAAAG
Seq C2 exon
AGAACCTGTGTCTTGGACCTCAGTGTCATTCTTGTCCAGAGAATTGGGTTTGGTTCAGATGCAGCTGTTACTACTTTTCCAAGGGAATGTTAACTTGGATAGAGAGTCAAAGTGCCTGCTCATCTCTAAATTCCAGTCTCATCAAGATAAACAAGGAGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030426_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=FE(24.6=100),PF148621=Defensin_big=PU(32.9=69.4)
A:
PF054737=Herpes_UL45=FE(9.2=100),PF148621=Defensin_big=FE(17.1=100)
C2:
PF054737=Herpes_UL45=FE(33.8=100),PF148621=Defensin_big=PD(48.7=75.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTCCTAATGGCCATGGC
R:
AGCTGCATCTGAACCAAACCC
Band lengths:
116-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development