BtaINT0006094 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B977]
Coordinates
chr5:100189608-100189984:-
Coord C1 exon
chr5:100189880-100189984
Coord A exon
chr5:100189647-100189879
Coord C2 exon
chr5:100189608-100189646
Length
233 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
ATATTTGACTGTTTTTGCAGCAT
3' ss Score
6.99
Exon sequences
Seq C1 exon
GAGATGTCTTGCCTCTTCCATGGAGGCTCATTTCTAAAATCCTGGGTGTCTTGTGCCTTCTCCTAATGGCCATGGCCATGGTGGTAGCTGTTGTTACTGCAAACT
Seq A exon
GTAAGTAAATACAGAAACTTCCAAATTGTGTTCCCCTCAGGAGCGCTGTTTCATTTCATAGAATATGATAAGCCAAAACAGGCTGAGAATAATTTTAGCTTACCAAAATTCTTCCTTTTTTATTTTCTTGAAAATTGCTGATTTATTTTTATGAAATATAGTCTTTGAGTATCTCATTTTTGAGGTTTCAATTTAAAATAAGAACTGCTCATGATATTTGACTGTTTTTGCAG
Seq C2 exon
CATCTTCCAAAAAATCACCTCTCAAAATCCAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030426:ENSBTAT00000042959:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=FE(24.6=100),PF148621=Defensin_big=PU(32.9=69.4)
A:
NA
C2:
PF054737=Herpes_UL45=FE(9.2=100),PF148621=Defensin_big=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTCTTGCCTCTTCCATGG
R:
TCTGCTGGATTTTGAGAGGTGA
Band lengths:
140-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]