MmuINT0088273 @ mm9
Intron Retention
Gene
ENSMUSG00000050241 | Klre1
Description
killer cell lectin-like receptor family E member 1 [Source:MGI Symbol;Acc:MGI:2662547]
Coordinates
chr6:129532020-129532448:+
Coord C1 exon
chr6:129532020-129532121
Coord A exon
chr6:129532122-129532409
Coord C2 exon
chr6:129532410-129532448
Length
288 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
GATCTGGACTGTTCTTGTAGCAT
3' ss Score
4.56
Exon sequences
Seq C1 exon
GGAATTGCTCACCTCCATGGAGGCTTCTCTCGAGTGTGCTCGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTACCACAAAGT
Seq A exon
GTGAGTGGCTCTTGTTCTCCTCTCGGGCAGGTTTGCAGAAACTTATCAAGTTCCTCACTGGCTCTGGGTACAGTTGATATGCTTGTCTACTAGTTGTGGGACATTGGCTTGGATGTCTGGTACCATTACCAGAAAACAATAGTGAAAACTATTTCATTTTTAACATTGTCTTTAAAATTGCTTATTTGTTGCTCTAGAACAGAAGGTTTTTTTTTTTTAAATTTTTTTATTAATTCTGTTGGTGTGTTAATATAAAGGAACTAATTATGATCTGGACTGTTCTTGTAG
Seq C2 exon
CATCTTCTGAAAGATCATCTTCTACTATTCAGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050241-Klre1:NM_153590:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTGCTCACCTCCATGGA
R:
TCTTGCTGAATAGTAGAAGATGATCT
Band lengths:
139-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: