MmuEX6007369 @ mm9
Exon Skipping
Gene
ENSMUSG00000050241 | Klre1
Description
killer cell lectin-like receptor family E member 1 [Source:MGI Symbol;Acc:MGI:2662547]
Coordinates
chr6:129532020-129533252:+
Coord C1 exon
chr6:129532020-129532121
Coord A exon
chr6:129532410-129532448
Coord C2 exon
chr6:129533107-129533252
Length
39 bp
Sequences
Splice sites
3' ss Seq
GATCTGGACTGTTCTTGTAGCAT
3' ss Score
4.56
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGAATTGCTCACCTCCATGGAGGCTTCTCTCGAGTGTGCTCGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTACCACAAAGT
Seq A exon
CATCTTCTGAAAGATCATCTTCTACTATTCAGCAAGAAG
Seq C2 exon
GGCTCCATCATCCCTGTCCAGAGAACTGGGTCTGGTTCAGGTGCAGCTGTTATTTCTTCTCCAAGGAAGAGCTAATTTGGAGAGACAGTCAGCGTGCCTGCTTGTCTCTTAACTCCAGTCTCATAAGGATGAACAAAGAGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050241-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.357 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(26.8=53.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGGAGGCTTCTCTCGA
R:
TCTGGACAGGGATGATGGAGC
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: