BtaALTA0000924-2/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCB8]
Coordinates
chr5:256056-268891:+
Coord C1 exon
chr5:256056-256255
Coord A exon
chr5:268650-268652
Coord C2 exon
chr5:268653-268891
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATTGTTATCATCTATTCCAGCAG
3' ss Score
6.25
Exon sequences
Seq C1 exon
TAGAAGCAAAATGTGGCATTTTGAGACCAGAGAGTACAACGTTCTCTCAGGACAATAATTCTGATAGTAACGTTGAAGATGTGGTTGAAACATTTCCCAAACCATCACCCTGGTTTGAGGGCATCTGTCATCCTGCCTTCCCATCGCCTGAGCCTGTTTCAAAACTTCTCAAGTCTGTAGCAGGCCTTGGTCGTACAAAG
Seq A exon
CAG
Seq C2 exon
AGTATCTCTGAGAGCCTTCCACAGAAGTATGTGGATCATTTACCTGGAACTGCTGGTGTAAGAGGAAAAAAATACATTGAATGGACAAGTAGAAGGTAAGAATTGTATTTTACAGAAAAATCATTTGACAGAATGTTGATTGAAAATGGGAATGCTGATACATTCTAATAGGCAAAGAAAATCACCTGTCGGATGGGTAGTGAGAAAAACATGAGAAAAGGACAGCAATTATGTATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037552-9-13,9-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=NA C2=0.156
Domain overlap (PFAM):
C1:
PF155111=CENP-T=PD(4.9=6.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCTGTAGCAGGCCTTGG
R:
TCCTCTTACACCAGCAGTTCCA
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development