BtaEX0001141 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCB8]
Coordinates
chr5:255906-268891:+
Coord C1 exon
chr5:255906-255966
Coord A exon
chr5:256056-256255
Coord C2 exon
chr5:268653-268891
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTGTTTTCACTGTAGTAG
3' ss Score
7.21
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CATGTCCTGAAATCAAAGTTAACAAAGCTAATGAAGGCTTCTCAGCAATCCAAGAAAAACA
Seq A exon
TAGAAGCAAAATGTGGCATTTTGAGACCAGAGAGTACAACGTTCTCTCAGGACAATAATTCTGATAGTAACGTTGAAGATGTGGTTGAAACATTTCCCAAACCATCACCCTGGTTTGAGGGCATCTGTCATCCTGCCTTCCCATCGCCTGAGCCTGTTTCAAAACTTCTCAAGTCTGTAGCAGGCCTTGGTCGTACAAAG
Seq C2 exon
AGTATCTCTGAGAGCCTTCCACAGAAGTATGTGGATCATTTACCTGGAACTGCTGGTGTAAGAGGAAAAAAATACATTGAATGGACAAGTAGAAGGTAAGAATTGTATTTTACAGAAAAATCATTTGACAGAATGTTGATTGAAAATGGGAATGCTGATACATTCTAATAGGCAAAGAAAATCACCTGTCGGATGGGTAGTGAGAAAAACATGAGAAAAGGACAGCAATTATGTATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037552-'8-13,'8-9,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.358 C2=0.156
Domain overlap (PFAM):
C1:
PF155111=CENP-T=FE(24.7=100)
A:
PF155111=CENP-T=PD(4.9=6.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGAAATCAAAGTTAACAAAGC
R:
ACATAATTGCTGTCCTTTTCTCATGT
Band lengths:
293-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development