MmuEX7003481 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118548830-118549698:-
Coord C1 exon
chr6:118549638-118549698
Coord A exon
chr6:118549386-118549537
Coord C2 exon
chr6:118548830-118548959
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTCATAATAGAAA
3' ss Score
8.25
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
AATGTCCCCAAAATTAATTTGACAGAGTTGTGGACAGCTGCTCAGCAGTCTAGGAAAAACC
Seq A exon
AAACAAAATGTGGCTTTGAGGAGCTAGACAATGGAGCCCGGTTTGATGACAGTGATTCCCCTAGTGAAAGTGAAGATGCCATTGAGGTTGAGCCTGCGCCATCAGTCAGAGTCCAGACCCTCTCCCCATCCCGTCAGTCACCTGACCCTGTG
Seq C2 exon
GAAGGAGCAACCGAGCTAGCAATTGAAGGAGAAGAAAACGGTACTGATGTTATTGAGAGCGCTTCACAGGAGCAACCAAATCATGACAATTTAACCCGTGCTGATGGTTGGCACAAAAGTAATAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'8-11,'8-8,9-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAATTTGACAGAGTTGTGGACAGC
R:
CACTTTTATTACTTTTGTGCCAACCA
Band lengths:
178-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types