RnoEX6014793 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150597081-150597932:-
Coord C1 exon
chr4:150597872-150597932
Coord A exon
chr4:150597637-150597788
Coord C2 exon
chr4:150597081-150597207
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCTTTTCGTAACAGAAA
3' ss Score
9.49
5' ss Seq
GTGGTGCGT
5' ss Score
6.46
Exon sequences
Seq C1 exon
AACGTTCCCAAAATTAATTTAACAGAGTTGTGGACAGCTGCCCAGCAGTCTAAGAAAAACC
Seq A exon
AAACAAAATGTGGCTTTGAGGAACCAGACAGTAGAGCCCTGTTTGACGATAGCAATTCCGCTAGTGAAAACGAAGATGCCACTGGGATTGAGCCTGAATCACCAGCCAGAGTCCAGACTCTCTCCCCGTCCTGTCAGTCACCCGACCCTGTG
Seq C2 exon
GAAGGAGCAGCTGATCCTGCAATTGAAGGAGAAGAAAACGGAAAGGATATCATTGAAAGCGCTTCACAGGAGCAATCACATGACAGTTTAGTCCGTGCTGACGGCTGGCACAGAAGTAATAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'13-13,'13-11,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACAGAGTTGTGGACAGCTGC
R:
CACTTTTATTACTTCTGTGCCAGCC
Band lengths:
170-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]