DreEX0000439 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3505581-3510329:-
Coord C1 exon
chr25:3510272-3510329
Coord A exon
chr25:3508554-3508750
Coord C2 exon
chr25:3505581-3505704
Length
197 bp
Sequences
Splice sites
3' ss Seq
TATGCTGTCTCTGTCTGTAGTCA
3' ss Score
8.66
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AAACAAAAAGTGAACTTAAAGAAGCTCATAAGCTCCTCGAAAAGGGAAAAGATAGACG
Seq A exon
TCATAGCAGATCGAGATGCAGACAAATCCTGGAGTGGATCCGAGTCTGAACCGGACAGTGAGGATAAGGGTGAAAAACGCCCACCACTGTCCAGGCCCTTCCCCTCCAGCAGTACCTACCTCCAACCCCCTGTAGAAACCGCCTCTTTGCCCCACCCACCCCAGATGAGCTCCACCCCCTTCAGCAGCACCCTTAAG
Seq C2 exon
GAAGAGGTCCTAACGGAGGATGAGGATGAAGAGGAGGATGAAGAAGAGGAGGTTGAGAGGGAGGAAATATGTAAAAAGGCTAGTGATCCTCAAGATCATGGCTCTAGCAAAGAAATGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_MULTIEX2-1/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAAGTGAACTTAAAGAAGCTCA
R:
CTGCTCATTTCTTTGCTAGAGCC
Band lengths:
178-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]