HsaEX6087925 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27356086-27366622:-
Coord C1 exon
chr10:27366562-27366622
Coord A exon
chr10:27366267-27366469
Coord C2 exon
chr10:27356086-27356215
Length
203 bp
Sequences
Splice sites
3' ss Seq
TTATTTTGTTTTTACTGTAGTAG
3' ss Score
5.5
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AATGTCCCAAAACCAAGCTTAGCAAAGCTAATGACTGCTTCTCAGCAATCCAGGAAAAATT
Seq A exon
TAGAAGCAACATATGGCACTGTGAGAACAGGAAATAGAACTTTGTTTGAGGATAGAGATTCCGATAGTCAAGATGAAGTTGTGGTTGAAAGCCTTCCTACAACATCAATCAAAGTCCAGTGCTTTTCTCATCCTACCTATCAATCACCTGACCTTCTTCCAAAACCTTCCCACAAGTCGTTAGCAAACCCTGGTCTTATGAAG
Seq C2 exon
GAAGAACCAACAAAGCCAGGCATTGCAAAAAAAGAAAATGGTATTGATATTATTGAAAGTGCTCCACTAGAGCAAACAAATAATGACAATTTGACTTATGTTGATGAAGTGCACAAAAATAATAGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.885 C2=0.970
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCAAAACCAAGCTTAGCA
R:
ATTATTTTTGTGCACTTCATCAACAT
Band lengths:
182-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)