HsaEX6087925 @ hg38
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27067157-27077693:-
Coord C1 exon
chr10:27077633-27077693
Coord A exon
chr10:27077338-27077540
Coord C2 exon
chr10:27067157-27067286
Length
203 bp
Sequences
Splice sites
3' ss Seq
TTATTTTGTTTTTACTGTAGTAG
3' ss Score
5.5
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AATGTCCCAAAACCAAGCTTAGCAAAGCTAATGACTGCTTCTCAGCAATCCAGGAAAAATT
Seq A exon
TAGAAGCAACATATGGCACTGTGAGAACAGGAAATAGAACTTTGTTTGAGGATAGAGATTCCGATAGTCAAGATGAAGTTGTGGTTGAAAGCCTTCCTACAACATCAATCAAAGTCCAGTGCTTTTCTCATCCTACCTATCAATCACCTGACCTTCTTCCAAAACCTTCCCACAAGTCGTTAGCAAACCCTGGTCTTATGAAG
Seq C2 exon
GAAGAACCAACAAAGCCAGGCATTGCAAAAAAAGAAAATGGTATTGATATTATTGAAAGTGCTCCACTAGAGCAAACAAATAATGACAATTTGACTTATGTTGATGAAGTGCACAAAAATAATAGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'17-29,'17-24,18-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=0.892 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCAAAACCAAGCTTAGCA
R:
ATTATTTTTGTGCACTTCATCAACAT
Band lengths:
182-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains