BtaEX6063873 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17949640-17960588:-
Coord C1 exon
chr13:17960555-17960588
Coord A exon
chr13:17956251-17956454
Coord C2 exon
chr13:17949640-17949733
Length
204 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTTTTTCACTGTAGTAG
3' ss Score
6.89
5' ss Seq
CAAGTTGTT
5' ss Score
-8.02
Exon sequences
Seq C1 exon
AGGATGAGAGTTCTGAAGAAGACTCTTTAAGCAG
Seq A exon
TAGAAGCAAAATGTGGTATTGTGAGACCAGAGAGTACAACCTTCTCTGAGGACAATAATTCTGATAGTGAAATTGAAGATGTGGTTGAAACCATTCCCGAACCATCACCTGGAGTCCAGGGCTTCTCTCATCCTGCCTTCCCATCAGCCGAGCCTCTTCCACAACCTCTCAAGTCTCTTGCAGGCCTTGGTCTCACAAAGGCAA
Seq C2 exon
AGTATCTCTGAGAGCCTTCCACAGAAGTATGTGGATCTTTTATCTGGAGCTGCTGGTCAAAGAGGAAAAAATACGTTAAATGGACAAGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'6-11,'6-7,9-11=AN
Average complexity
A_C3
Mappability confidence:
92%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.971 C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]