BtaALTA0000923-2/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCB8]
Coordinates
chr5:255906-256255:+
Coord C1 exon
chr5:255906-255966
Coord A exon
chr5:256056-256058
Coord C2 exon
chr5:256059-256255
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTCTCCTGTTTTCACTGTAGTAG
3' ss Score
7.21
Exon sequences
Seq C1 exon
CATGTCCTGAAATCAAAGTTAACAAAGCTAATGAAGGCTTCTCAGCAATCCAAGAAAAACA
Seq A exon
TAG
Seq C2 exon
AAGCAAAATGTGGCATTTTGAGACCAGAGAGTACAACGTTCTCTCAGGACAATAATTCTGATAGTAACGTTGAAGATGTGGTTGAAACATTTCCCAAACCATCACCCTGGTTTGAGGGCATCTGTCATCCTGCCTTCCCATCGCCTGAGCCTGTTTCAAAACTTCTCAAGTCTGTAGCAGGCCTTGGTCGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037552-8-10,8-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.358
Domain overlap (PFAM):
C1:
PF155111=CENP-T=FE(24.7=100)
A:
NA
C2:
PF155111=CENP-T=PD(4.9=6.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCTAATGAAGGCTTCTCAGC
R:
ATTGTCCTGAGAGAACGTTGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development