BtaEX6019673 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCB8]
Coordinates
chr5:255828-256255:+
Coord C1 exon
chr5:255828-255861
Coord A exon
chr5:255906-255966
Coord C2 exon
chr5:256056-256255
Length
61 bp
Sequences
Splice sites
3' ss Seq
GCTCTTATTTTCTTCTCCAGCAT
3' ss Score
8.43
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAGGAATGGGGGATGTTATAATTCTTTTATTCAG
Seq A exon
CATGTCCTGAAATCAAAGTTAACAAAGCTAATGAAGGCTTCTCAGCAATCCAAGAAAAACA
Seq C2 exon
TAGAAGCAAAATGTGGCATTTTGAGACCAGAGAGTACAACGTTCTCTCAGGACAATAATTCTGATAGTAACGTTGAAGATGTGGTTGAAACATTTCCCAAACCATCACCCTGGTTTGAGGGCATCTGTCATCCTGCCTTCCCATCGCCTGAGCCTGTTTCAAAACTTCTCAAGTCTGTAGCAGGCCTTGGTCGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037552-'7-9,'7-8,8-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.358
Domain overlap (PFAM):
C1:
PF155111=CENP-T=FE(13.6=100)
A:
PF155111=CENP-T=FE(24.7=100)
C2:
PF155111=CENP-T=PD(4.9=6.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAATGGGGGATGTTATAATTCT
R:
CCAGGGTGATGGTTTGGGAAA
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]