HsaEX0004397 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27366267-27368090:-
Coord C1 exon
chr10:27368018-27368090
Coord A exon
chr10:27366562-27366622
Coord C2 exon
chr10:27366267-27366469
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTCTTATTTTTGTTTTCTAGAAT
3' ss Score
10.47
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
GCTTTCTGGCAAACCGGGTGTTGATGATTCATGGCCTACCTCAGATGACGAAGACCTCAATTTTGATACTAAG
Seq A exon
AATGTCCCAAAACCAAGCTTAGCAAAGCTAATGACTGCTTCTCAGCAATCCAGGAAAAATT
Seq C2 exon
TAGAAGCAACATATGGCACTGTGAGAACAGGAAATAGAACTTTGTTTGAGGATAGAGATTCCGATAGTCAAGATGAAGTTGTGGTTGAAAGCCTTCCTACAACATCAATCAAAGTCCAGTGCTTTTCTCATCCTACCTATCAATCACCTGACCTTCTTCCAAAACCTTCCCACAAGTCGTTAGCAAACCCTGGTCTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=0.929 C2=0.885
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(7.7=12.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTACCTCAGATGACGAA
R:
AGGAAGGCTTTCAACCACAACT
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)