GgaEX7000341 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24071531-24075187:+
Coord C1 exon
chr1:24071531-24071572
Coord A exon
chr1:24075074-24075134
Coord C2 exon
chr1:24075153-24075187
Length
61 bp
Sequences
Splice sites
3' ss Seq
AAATGTATTTTTATTTGCAGAAG
3' ss Score
7.22
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ATAAAACTTTTCCTGTATTTCCTCGTAAGGAAACAGAAAAAA
Seq A exon
AAGCCACAGAAGCCAAACTTGACAATGTTAATGAATGTTTCCAAAAAGTTCAGGAATATCG
Seq C2 exon
ACTTCTTGATACAATGACATACAAAAGTAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'7-9,'7-8,9-9=AN
Average complexity
A_C3
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.143 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]