MmuEX6006482 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118549386-118552041:-
Coord C1 exon
chr6:118551969-118552041
Coord A exon
chr6:118549638-118549698
Coord C2 exon
chr6:118549386-118549537
Length
61 bp
Sequences
Splice sites
3' ss Seq
AATTATTTTTGTTTTTCTAGAAT
3' ss Score
8.61
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GTCTTATAACACACCTGGCCCTGCTGATTCCTGGCCGACATCAGATGAGGAGGACTATAACTTTGACAACAAG
Seq A exon
AATGTCCCCAAAATTAATTTGACAGAGTTGTGGACAGCTGCTCAGCAGTCTAGGAAAAACC
Seq C2 exon
AAACAAAATGTGGCTTTGAGGAGCTAGACAATGGAGCCCGGTTTGATGACAGTGATTCCCCTAGTGAAAGTGAAGATGCCATTGAGGTTGAGCCTGCGCCATCAGTCAGAGTCCAGACCCTCTCCCCATCCCGTCAGTCACCTGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTCCTGGCCGACATCAG
R:
GGCTCAACCTCAATGGCATCT
Band lengths:
144-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types