BtaEX0001143 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCB8]
Coordinates
chr5:245686-255966:+
Coord C1 exon
chr5:245686-245823
Coord A exon
chr5:251735-251768
Coord C2 exon
chr5:255906-255966
Length
34 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTTTTCTTTAATAGTGG
3' ss Score
8.11
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AACAGCCCTCATGCTTGCTGTCAAGTATGAATCAGCAAATGTCATCAGACTTCTTCTTCAACAAGGTGCTGACATCTTTTCTCAAGATGTTTTTGGATGGACTGCAGAAGAATATGCTGTTATTAGTGGTTTTAATAT
Seq A exon
TGGATGAGAGTTCTGAAGAGGACTCTTCAAGGAG
Seq C2 exon
CATGTCCTGAAATCAAAGTTAACAAAGCTAATGAAGGCTTCTCAGCAATCCAAGAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037552_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.917 C2=0.048
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(55.4=100)
A:
PF155111=CENP-T=FE(13.6=100)
C2:
PF155111=CENP-T=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCTGACATCTTTTCTCA
R:
TGGATTGCTGAGAAGCCTTCA
Band lengths:
127-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development