BtaINT0007030 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCB8]
Coordinates
chr5:252894-255861:+
Coord C1 exon
chr5:252894-252929
Coord A exon
chr5:252930-255827
Coord C2 exon
chr5:255828-255861
Length
2898 bp
Sequences
Splice sites
5' ss Seq
TACATAAAA
5' ss Score
-13.35
3' ss Seq
GCTCTTTGTGTTAGATCATAGAG
3' ss Score
-19.74
Exon sequences
Seq C1 exon
ATTTCTCAACAAACCTGGCATTGATTTAGGGCCTAC
Seq A exon
ATAAAATGATGAAATCTTAGATTTTAAAACAAGGTAAAGTGTTCTCTTGTGAAATTAGTTTTCCTGCTCTGAAATTAGGTTCATGTAGTATTTACTCTTATGATTAGACAGTGATAGTGACAAATAGATTCAAGGGATTAGATCCGATAAACAGAGTGCCTGAAGAACTATGGATGGAGATTCATGACATTGTACAAGAGGCAGTTATCAAGATCATACCCAAGAAGAAAAGCAAAAAGGCAAAATGGTTGTCTGAGGAGGCCTTCCAAATACCTGAGGAAAGAAGAGAAGCAAAAGGCAAAGGAGAAATGGAAAGATATGCCCATTTGAATGGAGAGTTCCAAAGAATAGCAGAGAGATAAGAAAGCTTTTCTCAGTGATGAATGCAAAGAAACAGAGGAAAAATTAGAATGGGAAAGGCAGGAGATCTCTTGAAGAAAATTAGAGATACCATGGGAACATTTCATGAAGACGGACACCATAAAGGACAAAATGGTATCGACCTAAGAAAAGCAGAAGATATTAAGATGAGGTTGCAAGAACACACAGAACTCTACAAAAAAAAGATCTTTATGATCCAGATAACCAGGATGGTGTGATCACTCACCTAGAGCCAAACATCCTGGAATGCGAAGTCAAATAGGCCTTAAGAAGCATCACTATGACCAAAGCTAGTGGAGGTGATGGAATTTCAGTTCAGCTATTTCAAATCCTCAAAGATGATGCTGTGAAAGTGCTGCACTCAATATGCCAGCAAATCTGGAAAACTCATCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCCTTCCAATCCCAAAGAAAGGCAATGTCAAAGAATGTTCAAACTACCACATAATGGCACACATCTCACATGCTAGCAAAGTAATGCTCAAAATTTTCCAAGCCAGGCTTCAAGAGTACGTGAACCATGAACTTCATATGTTCAAGCTGGATTTAGAAAAGGCATAGGAACCAGAGATGGGAGTACCAGACCATCTGAACTGCCTCTGGAGAAATCTGTATACAGGACAAGAAGCAACAGTTAGAACTGGATATGGAACAATAGACTGGGTCCAACTCAGGAAAGGAGTACATCAAGGATATAAATTTTCACCCTGCTTATTTTACTTACATGCAGAGTACATCATACGAAATGCTAGGCTGAATGAAGCACAAGCTGGAATCAAGATAGCTAGAAGAAATGTCAATAACCTCACATACACAGGTGACACCACCATGATGGCAGAAATTGAAGAAGCACTAAAGAACCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGACTTACAACAAAACATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAATGGAAACAGTGACAGACTTCTTTTGGGGGGCTCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTGCTCCTTGGATGAAAAGCTATGCTCAACCTAGAGAGCAGATTCAAAAGCAGGGATATTACTTTGCCATCAAAGTTCTGTCTAGTCTAAGCTATGGTTTTTATAGTAGTCATGTATGGATGTGAGAGTTGGACTATAAAGCAGGCTGAGCGCCGAATAATTGCTGCTTTTGAACTGTGGTATTGAAGACTCTTCAGAGTCCCTTGGACTGCAAGGAGATCCAATTAGTCCATTCTAAAGGAAATCAGTCCTGAATATTCATTGAAAGGATTGATGCTGAAGCTGAAACTCCAATAGTTTGGTCATCTGATGCGAAGACCTGACTCATTGGAAAATACGGGTTCTAGGAAAGTTTGAAGGCTGGAGGAGAAGGGAACGACAGAGGATGAGATGGTTGGATGGCATCCCCCACTCAATGGACAAGAGTTTGTAAAACCTCTGGGAGTTGGTGATGAACAGGGAAGCCTGGTGTGCTGCAGTCCATGGGATCACAGAGAGTTGCACACAACTGAGCAACTGAACTGAGCTGAACTGATGTTGATATTTTCATAAAATTTGATGAGCAGTGTAGATGCATAAAAATATATCAATAAAATCATATGAAACGGAGGCTTTGCTCATAGTATATCCTTAAGAATACTGATATGTAACTGATCTATTGTATATAAAGTCTAAATATATGTGTTTCTCCACATACTTTATTATACTTGTTTTTTTTTCCATAAAGTTTGTTCTTAACTAGGAATGTCTCACTTTTTCCTTTCTTCTTCCTCCTCTACTTTTTTATTTTTTATTTTTAATATTTACTGTTAACCTAATTTTTCCTTGCAGAACACATTTCTTCAGTGTCTGTTCTTTCAGTCCATCTCTCTGTCTCTACTGTGAACATGTTTGCTTATGGCTTTCTATTTAGAGTGTGGCATTCTTTCATGATCATTGCCCTATGGGTTTAACCTTGTTTTTTCCCTGTTTCATGGAAGCAGCTGAATTTTTTTGCCTGTTTCATTGGTCTCTAGTTGTTTGACAAACAGAATAGAAGTAGCTTATCGTGTTTGCAGTTCTAGCCCATATAAATAAAGTTCTGTTAAAACCTAAACTTTCATATTTCCCTTCACAAGTGATAATCCATGTACATATTAATCATGGAAGCAAATTTCAAAATATAGCAATTAATTTAAATGTCTTAGTTTTTCAATAGTGCTCTAAACTACCGGGGATAACTTATTACTCTAGAACATTTTGGTAGAGAAAGTAATCTAGTGGGTGTCCTAGTATTTGTATAGCAGTCAATTAGGGGTAAGGAGAGGAACATCTGGGGCTTCTGATGTGATCTGTCATAGTCCTTTCCCCATGAGAAGGTCAGTCAGGGACAGAACTGGGATTTGAATCCACATCTGAATGACTCCAGAGCCTGTGCTCTTTGTGTTAGATCATA
Seq C2 exon
GAGGAATGGGGGATGTTATAATTCTTTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037552:ENSBTAT00000046813:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF155111=CENP-T=FE(14.8=100)
A:
NA
C2:
PF155111=CENP-T=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]