RnoEX0009595 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150600189-150606987:-
Coord C1 exon
chr4:150606926-150606987
Coord A exon
chr4:150604214-150604247
Coord C2 exon
chr4:150600189-150600261
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTTTCTTTAATAGTGG
3' ss Score
8.43
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CAACAGGCAAATATTTGAATATGATGGGAAGAGACCAAAAAATTCTGAAAATAGCAATGCAG
Seq A exon
TGGATAATGTTTCTGAAGATGGCTCTTTAACCAG
Seq C2 exon
GTCTTCTCACATACCTGATCCTGCCGACTCCTGGCCTACATCAGATGAGGATGACTATAACTTTGATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'10-9,'10-7,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCAAATATTTGAATATGATGGG
R:
TCATCCTCATCTGATGTAGGCCA
Band lengths:
114-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]