DreEX6100457 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3510412-3511756:-
Coord C1 exon
chr25:3511724-3511756
Coord A exon
chr25:3510563-3510599
Coord C2 exon
chr25:3510412-3510484
Length
37 bp
Sequences
Splice sites
3' ss Seq
ATTTACATTTCTCTTCTCAGATA
3' ss Score
10.13
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CAGCAGGAAGCAGCTCCGTAGCAGCAGGGAAAG
Seq A exon
ATACAGAGGATAATTCCCACACAGACTCCATCAGCAG
Seq C2 exon
GGCATCGAAAAGTGGTGCTGCTGATTCCTGGCCTTCATCAGATGAAGATGAGGAGTTAGATTTGAGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'9-9,'9-8,10-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGCAGCTCCGTAG
R:
CTTTGGGCTCAAATCTAACTCCTCA
Band lengths:
104-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]