BtaEX6063871 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17959361-17963180:-
Coord C1 exon
chr13:17963113-17963180
Coord A exon
chr13:17960555-17960588
Coord C2 exon
chr13:17959361-17959430
Length
34 bp
Sequences
Splice sites
3' ss Seq
CTTACTTTTTTCTTTAATAGAGG
3' ss Score
8.1
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CATTCGCCAACTGATTTCTGAATATAAAGAAGAGAGACCTAAAACTCCTCCTGAAAACAGCAACCCAG
Seq A exon
AGGATGAGAGTTCTGAAGAAGACTCTTTAAGCAG
Seq C2 exon
ATTTTCCAACAAACCTGGTGTTGATTCATGGCCTACATCAGATGATGAAGACTTAGATTTGGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'5-5,'5-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGCCAACTGATTTCTGAA
R:
CATCATCTGATGTAGGCCATGA
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]