BtaEX0001142 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCB8]
Coordinates
chr5:245686-251768:+
Coord C1 exon
chr5:245686-245823
Coord A exon
chr5:248864-248902
Coord C2 exon
chr5:251735-251768
Length
39 bp
Sequences
Splice sites
3' ss Seq
ACTGATTTCTGAATATAAAGAAA
3' ss Score
0.24
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AACAGCCCTCATGCTTGCTGTCAAGTATGAATCAGCAAATGTCATCAGACTTCTTCTTCAACAAGGTGCTGACATCTTTTCTCAAGATGTTTTTGGATGGACTGCAGAAGAATATGCTGTTATTAGTGGTTTTAATAT
Seq A exon
AAAAGAGATCTAAAACTTCTCCTGAAAATAACAACCCAG
Seq C2 exon
TGGATGAGAGTTCTGAAGAGGACTCTTCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037552_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.917
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(55.4=100)
A:
PF127962=Ank_2=PD(20.5=65.4),PF155111=CENP-T=PU(25.9=80.8)
C2:
PF155111=CENP-T=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCTTCAACAAGGTGCTGACA
R:
AGTCCTCTTCAGAACTCTCATCCA
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development