MmuEX6099286 @ mm10
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23230109-23257003:+
Coord C1 exon
chr2:23230109-23230246
Coord A exon
chr2:23233853-23233890
Coord C2 exon
chr2:23256931-23257003
Length
38 bp
Sequences
Splice sites
3' ss Seq
CACTCTTTTGTATATGACAGGAG
3' ss Score
6.5
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAATTCTCTCATGTATGCTGTAAGGTGTGACTCACCAGTTATGGTCAACCTTATTCTTCAACAAGGTGTCGACATAAATTTGAAAGATTTATTTGGATGGACTGCTTTACGTTATGCTATTGAAGGTGATCGTGATGT
Seq A exon
GAGGACAATGCTTTTGGAGTTAAGAAAGAGAAATCGAG
Seq C2 exon
AAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774_MULTIEX2-1/6=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.923
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(87.8=76.6)
A:
PF127962=Ank_2=FE(19.1=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGACTGCTTTACGTTATGC
R:
GTCTGCGGGTTTGTGTCTTCT
Band lengths:
114-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types