BtaEX0001321 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11367385-11433154:+
Coord C1 exon
chr13:11367385-11367490
Coord A exon
chr13:11404052-11404119
Coord C2 exon
chr13:11432944-11433154
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATTACATTTTTAATGCATAGCAT
3' ss Score
4.87
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GATGATCTGATACCACTGTTACTTGCTATACATGAAAGAAGAGGGCAAATGGTGGAGGTTTTAGTGAAGAAAGAAACAAATATACATCGGTTGATAAGATGAAAAG
Seq A exon
CATTCGCCAACTGATTTCTGCATATAAAGAAGAGAGACCTAAAACTCCTCCTGAAAATAGCAACCCAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATTCAAGATACAATTCTTTCACGTGAAAGATTAGTAGGTTTTCAAAGAAGCCATTGTGAACTACTTAGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTAAAGTCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGAGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-11/38=5-25
Average complexity
C3
Mappability confidence:
87%=100=88%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.680 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGGTTTTAGTGAAGAA
R:
AGCCCACGAACCTTACTTTTCA
Band lengths:
181-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development