RnoEX0009607 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150604214-150609169:-
Coord C1 exon
chr4:150609063-150609169
Coord A exon
chr4:150606926-150606987
Coord C2 exon
chr4:150604214-150604247
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTGTCATTTTTTTAACATAGCAA
3' ss Score
5
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GATGACCTAACGCCTATGTTACTGGCTGTAAAGGAAAATAAACAGCATATTGTGGAATTTCTAGTAAAGAAGAAAACAAGTATTCACGCAGCTGATCAGCTTGGAAG
Seq A exon
CAACAGGCAAATATTTGAATATGATGGGAAGAGACCAAAAAATTCTGAAAATAGCAATGCAG
Seq C2 exon
TGGATAATGTTTCTGAAGATGGCTCTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'7-7,'7-4,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.864 C2=1.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=86.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCCTATGTTACTGGCTGT
R:
CTGGTTAAAGAGCCATCTTCAGA
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]