BtaEX6063870 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17960555-17966740:-
Coord C1 exon
chr13:17966634-17966740
Coord A exon
chr13:17963113-17963180
Coord C2 exon
chr13:17960555-17960588
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATCACATTTTTAATACATAGCAT
3' ss Score
5.04
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GATGACCTCACACCGCTGTCACTTGCTGTAAGTGAAAGGAAACAGCAAATGGTGGAGTTTTTAGCCAAGAAAGAAGCAAATATACATGCGGTTGATAAGATGCAAAG
Seq A exon
CATTCGCCAACTGATTTCTGAATATAAAGAAGAGAGACCTAAAACTCCTCCTGAAAACAGCAACCCAG
Seq C2 exon
AGGATGAGAGTTCTGAAGAAGACTCTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'4-4,'4-3,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.875 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCTCACACCGCTGTC
R:
AAAGAGTCTTCTTCAGAACTCTCA
Band lengths:
135-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]