MmuEX6006479 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118502764-118506320:-
Coord C1 exon
chr6:118506214-118506320
Coord A exon
chr6:118504222-118504283
Coord C2 exon
chr6:118502764-118502797
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTTGTCATTTTTAAACATAGCAA
3' ss Score
4.43
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATGACCTAACACCTATGTTACTTGCTGTAAAGGAAAATAAACAACATATTGTGGAATTTTTAGTAAAGAAGAAAGCAAGTATTCACGCAGTTGATCAGCTTGGAAG
Seq A exon
CAACAGGCAAATGTTTGAATATGATGGGAAGAGACTACAAAGATCTGAAAACAGCAATCCAG
Seq C2 exon
TGGATAATGGTTCTGAAGATGGCTCTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.818 C2=1.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=91.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTATGTTACTTGCTGTAAAGGA
R:
CTGGTTAAAGAGCCATCTTCAGA
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: