HsaEX6087923 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27371732-27381441:-
Coord C1 exon
chr10:27381335-27381441
Coord A exon
chr10:27375468-27375538
Coord C2 exon
chr10:27371732-27371762
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTACATTTTTCTATACATAGCAG
3' ss Score
4.96
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GATGACCTCACACCACTTTTACTTGCAGTAAGTGGAAAAAAGCAGCAAATGGTGGAATTTTTAATAAAGAAAAAAGCAAATGTAAATGCAGTAGATAAGTTGGAAAG
Seq A exon
CAGTCACCAACTAATTTCAGAATATAAAGAAGAAAGGATACCTAAACATTCTTCTCAAAATAGTAATTCAG
Seq C2 exon
TGGATGAAAGCTCTGAAGACTCCTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.733 C2=0.864
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=91.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCACACCACTTTTACTTGC
R:
CTGCTTAAGGAGTCTTCAGAGCT
Band lengths:
135-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)