MmuEX6099286 @ mm9
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23085629-23096474:+
Coord C1 exon
chr2:23085629-23085766
Coord A exon
chr2:23089373-23089410
Coord C2 exon
chr2:23096444-23096474
Length
38 bp
Sequences
Splice sites
3' ss Seq
CACTCTTTTGTATATGACAGGAG
3' ss Score
6.5
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAATTCTCTCATGTATGCTGTAAGGTGTGACTCACCAGTTATGGTCAACCTTATTCTTCAACAAGGTGTCGACATAAATTTGAAAGATTTATTTGGATGGACTGCTTTACGTTATGCTATTGAAGGTGATCGTGATGT
Seq A exon
GAGGACAATGCTTTTGGAGTTAAGAAAGAGAAATCGAG
Seq C2 exon
CATTTCAGAGTTCTGAAAACTCTTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'4-6,'4-5,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(87.8=76.6)
A:
PF127962=Ank_2=FE(19.1=100)
C2:
PF127962=Ank_2=PD(1.5=9.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: