BtaALTA0000931-2/2 @ bosTau6
Alternative 3'ss
Description
NA
Coordinates
chr22:16470249-16475514:+
Coord C1 exon
chr22:16470249-16470362
Coord A exon
chr22:16475036-16475044
Coord C2 exon
chr22:16475045-16475514
Length
9 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TTTAACAGTGATTTCTTTAGGTC
3' ss Score
6.44
Exon sequences
Seq C1 exon
CCGCGGGTCAGCCATTATTCTGGGCTTCAGGTGCGTCCAGTTTTCGTGTCATCTCCTGGCGTCCCGGCGCCAAGGTGGTGGTCCCCAAGGCCGGAGCCGCCGCGGGAGACCCCG
Seq A exon
GTCTTACAG
Seq C2 exon
ATGATGTTCTTCGAACTCTAAGGAAAAAGTCAAGCAAGGATTGAGGGACCCTGGAGAGGAACCTGTCTTAAATGGCAACAATGACAAGAGAAAATTGGGCCCACAATGCTCTGCGACAAGAGGGCCTTGTTAAAGGGAAGGATGATACCTGGAAGTGGGGAACCAGCTTCCAAGGGAGTAGCTCCACTGTTTGGGAGACCTCCCACCTGCACTTTAGACAGTTACGTTATCATGAGACATCTGGACCCCAGGAGGCACTGAGCCGGCTCCGGGAGCTCTGTCGCCGGTGGCTGAGGCCGGAAGCACGCACCAAGGCCCAGATCTTGGAGCTACTGGTGCTGGAGCAATTCCTGAGCATCCTGCCTGGAGAGATACGGACCTGGGTGCAGATCCATCGGCCCGGGAGTGGTGAGGAGGCCGTGGCCCTGGTAGAAGAGCTGCAGAAAGACCTTGATGGACCAACATTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037803-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGTGGTCCCCAAGG
R:
GGGTCCCTCAATCCTTGCTTG
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development