HsaALTA0009754-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000186448 | ZNF197
Description
zinc finger protein 197 [Source:HGNC Symbol;Acc:12988]
Coordinates
chr3:44666511-44670882:+
Coord C1 exon
chr3:44666511-44666635
Coord A exon
chr3:44670557-44670565
Coord C2 exon
chr3:44670566-44670882
Length
9 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TTTAACAATGATTTCTTGAGGTC
3' ss Score
-2.91
Exon sequences
Seq C1 exon
AGTATTCTCGGCTCGGCCATTATTCTGTGCCTCGGCTGCCGGAAGGGCTCGTTCCTGTGTCATCTCCTAGCGGCCTGGCGCCGAGGCGGCGGTACGCAAGGCTGGAGCCGCAGCGGGAGCCCCCG
Seq A exon
GTCTTGTAG
Seq C2 exon
ATGATACTCTCCAAGCTGTAAGGAAGAAGTCAAGGATTAAGGAGACCTGGACTGGAGAGGAGCCTTTTTCAAAAAACAACAATGACAAGAGAAAATGTAGCCCACAATGCTCTGAGACAAGAGGGCCTTGTGAAGGGGAAGGATGATACCTGGAAATGGGGAACCAGCTTCCAAGGAAGTAGCTCCTCTGTTTGGGAGACCTCCCACCTACACTTTAGACAATTACGTTACCATGAGACATCTGGACCCCAGGAAGCCCTGAGCCGGCTCAGGGAACTCTGTCGCCGGTGGCTGAGACCAGAAGCACGCACCAAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186448-2-7,2-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.058
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACGCAAGGCTGGAGC
R:
AAAGGCTCCTCTCCAGTCCAG
Band lengths:
102-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)